{"openapi":"3.1.0","info":{"title":"PanGBank API","description":"API for managing collections pangenomes.","version":"0.7.0"},"paths":{"/collections/":{"get":{"tags":["collections"],"summary":"Get Collections","operationId":"get_collections_collections__get","parameters":[{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}},{"name":"only_latest_release","in":"query","required":false,"schema":{"anyOf":[{"type":"boolean"},{"type":"null"}],"title":"Only Latest Release"}},{"name":"collection_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Collection Name"}},{"name":"collection_id","in":"query","required":false,"schema":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Collection Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/CollectionPublicWithReleases"},"title":"Response Get Collections Collections  Get"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/collections/{collection_id}":{"get":{"tags":["collections"],"summary":"Get Collections","operationId":"get_collections_collections__collection_id__get","parameters":[{"name":"collection_id","in":"path","required":true,"schema":{"type":"integer","title":"Collection Id"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}},{"name":"only_latest_release","in":"query","required":false,"schema":{"anyOf":[{"type":"boolean"},{"type":"null"}],"title":"Only Latest Release"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/CollectionPublicWithReleases"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/collections/{collection_id}/mash_sketch":{"get":{"tags":["collections"],"summary":"Get Collection Mash Release Sketch","operationId":"get_collection_mash_release_sketch_collections__collection_id__mash_sketch_get","parameters":[{"name":"collection_id","in":"path","required":true,"schema":{"type":"integer","title":"Collection Id"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}}],"responses":{"200":{"description":"Successful Response"},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/collections/{collection_id}/multiqc_report":{"get":{"tags":["collections"],"summary":"Get Collection Release Multiqc","operationId":"get_collection_release_multiqc_collections__collection_id__multiqc_report_get","parameters":[{"name":"collection_id","in":"path","required":true,"schema":{"type":"integer","title":"Collection Id"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}}],"responses":{"200":{"description":"Successful Response","content":{"text/html":{"schema":{"type":"string"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/collections/{collection_id}/release_notes":{"get":{"tags":["collections"],"summary":"Get Collection Release Notes","operationId":"get_collection_release_notes_collections__collection_id__release_notes_get","parameters":[{"name":"collection_id","in":"path","required":true,"schema":{"type":"integer","title":"Collection Id"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}}],"responses":{"200":{"description":"Successful Response","content":{"text/plain":{"schema":{"type":"string"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/genomes/":{"get":{"tags":["genomes"],"summary":"Read Genomes","operationId":"read_genomes_genomes__get","parameters":[{"name":"taxon_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string","minLength":3},{"type":"null"}],"title":"Taxon Name"}},{"name":"substring_taxon_match","in":"query","required":false,"schema":{"type":"boolean","default":false,"title":"Substring Taxon Match"}},{"name":"genome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Genome Name"}},{"name":"offset","in":"query","required":false,"schema":{"type":"integer","default":0,"title":"Offset"}},{"name":"limit","in":"query","required":false,"schema":{"type":"integer","maximum":100,"default":20,"title":"Limit"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/GenomePublic"},"title":"Response Read Genomes Genomes  Get"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/genomes/{genome_id}":{"get":{"tags":["genomes"],"summary":"Get Genome By Id","operationId":"get_genome_by_id_genomes__genome_id__get","parameters":[{"name":"genome_id","in":"path","required":true,"schema":{"type":"integer","title":"Genome Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/GenomePublic"}}}},"404":{"description":"Not found"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/":{"get":{"tags":["pangenomes"],"summary":"Get Pangenomes","operationId":"get_pangenomes_pangenomes__get","parameters":[{"name":"pangenome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Pangenome Name"}},{"name":"genome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Genome Name"}},{"name":"taxon_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string","minLength":3},{"type":"null"}],"title":"Taxon Name"}},{"name":"substring_taxon_match","in":"query","required":false,"schema":{"type":"boolean","default":false,"title":"Substring Taxon Match"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}},{"name":"only_latest_release","in":"query","required":false,"schema":{"anyOf":[{"type":"boolean"},{"type":"null"}],"title":"Only Latest Release"}},{"name":"collection_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Collection Name"}},{"name":"collection_id","in":"query","required":false,"schema":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Collection Id"}},{"name":"offset","in":"query","required":false,"schema":{"type":"integer","default":0,"title":"Offset"}},{"name":"limit","in":"query","required":false,"schema":{"type":"integer","maximum":100,"default":20,"title":"Limit"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/PangenomePublic"},"title":"Response Get Pangenomes Pangenomes  Get"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/{pangenome_id}":{"get":{"tags":["pangenomes"],"summary":"Get Pangenome","operationId":"get_pangenome_pangenomes__pangenome_id__get","parameters":[{"name":"pangenome_id","in":"path","required":true,"schema":{"type":"integer","title":"Pangenome Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/PangenomePublic"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/{pangenome_id}/file":{"get":{"tags":["pangenomes"],"summary":"Get Pangenome File","operationId":"get_pangenome_file_pangenomes__pangenome_id__file_get","parameters":[{"name":"pangenome_id","in":"path","required":true,"schema":{"type":"integer","title":"Pangenome Id"}}],"responses":{"200":{"description":"Successful Response"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/{pangenome_id}/genomes":{"get":{"tags":["pangenomes"],"summary":"Get Genomes In Pangenome","operationId":"get_genomes_in_pangenome_pangenomes__pangenome_id__genomes_get","parameters":[{"name":"pangenome_id","in":"path","required":true,"schema":{"type":"integer","title":"Pangenome Id"}},{"name":"genome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Genome Name"}},{"name":"offset","in":"query","required":false,"schema":{"type":"integer","default":0,"title":"Offset"}},{"name":"limit","in":"query","required":false,"schema":{"type":"integer","maximum":100,"default":20,"title":"Limit"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"array","items":{"$ref":"#/components/schemas/GenomePangenomeLinkPublic"},"title":"Response Get Genomes In Pangenome Pangenomes  Pangenome Id  Genomes Get"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/{pangenome_id}/{genome_id}":{"get":{"tags":["pangenomes"],"summary":"Get Genome In Pangenome","operationId":"get_genome_in_pangenome_pangenomes__pangenome_id___genome_id__get","parameters":[{"name":"pangenome_id","in":"path","required":true,"schema":{"type":"integer","title":"Pangenome Id"}},{"name":"genome_id","in":"path","required":true,"schema":{"type":"integer","title":"Genome Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"$ref":"#/components/schemas/GenomePangenomeLinkPublic"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/{pangenome_id}/{genome_id}/cgview_map":{"get":{"tags":["pangenomes"],"summary":"Get Genome Cgview Map","operationId":"get_genome_cgview_map_pangenomes__pangenome_id___genome_id__cgview_map_get","parameters":[{"name":"pangenome_id","in":"path","required":true,"schema":{"type":"integer","title":"Pangenome Id"}},{"name":"genome_id","in":"path","required":true,"schema":{"type":"integer","title":"Genome Id"}}],"responses":{"200":{"description":"Successful Response"},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}},"/pangenomes/count/":{"get":{"tags":["pangenomes"],"summary":"Get Pangenome Count","operationId":"get_pangenome_count_pangenomes_count__get","parameters":[{"name":"pangenome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Pangenome Name"}},{"name":"genome_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Genome Name"}},{"name":"taxon_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string","minLength":3},{"type":"null"}],"title":"Taxon Name"}},{"name":"substring_taxon_match","in":"query","required":false,"schema":{"type":"boolean","default":false,"title":"Substring Taxon Match"}},{"name":"release_version","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Release Version"}},{"name":"only_latest_release","in":"query","required":false,"schema":{"anyOf":[{"type":"boolean"},{"type":"null"}],"title":"Only Latest Release"}},{"name":"collection_name","in":"query","required":false,"schema":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Collection Name"}},{"name":"collection_id","in":"query","required":false,"schema":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Collection Id"}}],"responses":{"200":{"description":"Successful Response","content":{"application/json":{"schema":{"type":"integer","title":"Response Get Pangenome Count Pangenomes Count  Get"}}}},"422":{"description":"Validation Error","content":{"application/json":{"schema":{"$ref":"#/components/schemas/HTTPValidationError"}}}}}}}},"components":{"schemas":{"CollectionPublic":{"properties":{"name":{"type":"string","title":"Name"},"description":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Description"},"id":{"type":"integer","title":"Id"}},"type":"object","required":["name","id"],"title":"CollectionPublic"},"CollectionPublicWithReleases":{"properties":{"name":{"type":"string","title":"Name"},"description":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Description"},"id":{"type":"integer","title":"Id"},"releases":{"items":{"$ref":"#/components/schemas/CollectionReleasePublic"},"type":"array","title":"Releases"}},"type":"object","required":["name","id","releases"],"title":"CollectionPublicWithReleases"},"CollectionReleasePublic":{"properties":{"version":{"type":"string","title":"Version"},"ppanggolin_version":{"type":"string","title":"Ppanggolin Version"},"pangbank_wf_version":{"type":"string","title":"Pangbank Wf Version"},"release_note":{"type":"string","title":"Release Note"},"mash_version":{"type":"string","title":"Mash Version"},"mash_sketch_md5sum":{"type":"string","title":"Mash Sketch Md5Sum"},"latest":{"type":"boolean","title":"Latest","default":false},"date":{"type":"string","format":"date-time","title":"Date"},"collection_id":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Collection Id"},"taxonomy_source_id":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Taxonomy Source Id"},"pangenome_count":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Pangenome Count"},"genome_count":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Genome Count"},"id":{"type":"integer","title":"Id"},"taxonomy_source":{"$ref":"#/components/schemas/TaxonomySourcePublic"},"collection_name":{"type":"string","title":"Collection Name"},"collection":{"$ref":"#/components/schemas/CollectionPublic"}},"type":"object","required":["version","ppanggolin_version","pangbank_wf_version","release_note","mash_version","mash_sketch_md5sum","date","id","taxonomy_source","collection_name","collection"],"title":"CollectionReleasePublic"},"GenomePangenomeLinkPublic":{"properties":{"Genome_name":{"type":"string","title":"Genome Name"},"Contigs":{"type":"integer","title":"Contigs"},"Genes":{"type":"integer","title":"Genes"},"Fragmented_genes":{"type":"integer","title":"Fragmented Genes"},"Families":{"type":"integer","title":"Families"},"Families_with_fragments":{"type":"integer","title":"Families With Fragments"},"Families_in_multicopy":{"type":"integer","title":"Families In Multicopy"},"Soft_core_families":{"type":"integer","title":"Soft Core Families"},"Soft_core_genes":{"type":"integer","title":"Soft Core Genes"},"Exact_core_families":{"type":"integer","title":"Exact Core Families"},"Exact_core_genes":{"type":"integer","title":"Exact Core Genes"},"Persistent_genes":{"type":"integer","title":"Persistent Genes"},"Persistent_fragmented_genes":{"type":"integer","title":"Persistent Fragmented Genes"},"Persistent_families":{"type":"integer","title":"Persistent Families"},"Persistent_families_with_fragments":{"type":"integer","title":"Persistent Families With Fragments"},"Persistent_families_in_multicopy":{"type":"integer","title":"Persistent Families In Multicopy"},"Shell_genes":{"type":"integer","title":"Shell Genes"},"Shell_fragmented_genes":{"type":"integer","title":"Shell Fragmented Genes"},"Shell_families":{"type":"integer","title":"Shell Families"},"Shell_families_with_fragments":{"type":"integer","title":"Shell Families With Fragments"},"Shell_families_in_multicopy":{"type":"integer","title":"Shell Families In Multicopy"},"Cloud_genes":{"type":"integer","title":"Cloud Genes"},"Cloud_fragmented_genes":{"type":"integer","title":"Cloud Fragmented Genes"},"Cloud_families":{"type":"integer","title":"Cloud Families"},"Cloud_families_with_fragments":{"type":"integer","title":"Cloud Families With Fragments"},"Cloud_families_in_multicopy":{"type":"integer","title":"Cloud Families In Multicopy"},"Completeness":{"type":"number","title":"Completeness"},"Contamination":{"type":"number","title":"Contamination"},"Fragmentation":{"type":"number","title":"Fragmentation"},"RGPs":{"type":"integer","title":"Rgps"},"Spots":{"type":"integer","title":"Spots"},"Modules":{"type":"integer","title":"Modules"},"genome_id":{"type":"integer","title":"Genome Id"},"pangenome_id":{"type":"integer","title":"Pangenome Id"},"genome_file_md5sum":{"type":"string","title":"Genome File Md5Sum"},"genome_file_name":{"type":"string","title":"Genome File Name"}},"type":"object","required":["Genome_name","Contigs","Genes","Fragmented_genes","Families","Families_with_fragments","Families_in_multicopy","Soft_core_families","Soft_core_genes","Exact_core_families","Exact_core_genes","Persistent_genes","Persistent_fragmented_genes","Persistent_families","Persistent_families_with_fragments","Persistent_families_in_multicopy","Shell_genes","Shell_fragmented_genes","Shell_families","Shell_families_with_fragments","Shell_families_in_multicopy","Cloud_genes","Cloud_fragmented_genes","Cloud_families","Cloud_families_with_fragments","Cloud_families_in_multicopy","Completeness","Contamination","Fragmentation","RGPs","Spots","Modules","genome_id","pangenome_id","genome_file_md5sum","genome_file_name"],"title":"GenomePangenomeLinkPublic"},"GenomePublic":{"properties":{"name":{"type":"string","title":"Name"},"genome_source_id":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Genome Source Id"},"ncbi_genome_category":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Ncbi Genome Category"},"genome_category":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Genome Category"},"strain":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Strain"},"organism_name":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Organism Name"},"checkm2_completeness":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Checkm2 Completeness"},"checkm2_contamination":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Checkm2 Contamination"},"checkm2_model":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Checkm2 Model"},"checkm_completeness":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Checkm Completeness"},"checkm_contamination":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Checkm Contamination"},"checkm_strain_heterogeneity":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Checkm Strain Heterogeneity"},"gc_count":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Gc Count"},"gc_percentage":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Gc Percentage"},"genome_size":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Genome Size"},"l50_contigs":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"L50 Contigs"},"n50_contigs":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"N50 Contigs"},"id":{"type":"integer","title":"Id"},"genome_source":{"$ref":"#/components/schemas/GenomeSourcePublic"},"taxonomies":{"items":{"$ref":"#/components/schemas/TaxonomyPublic"},"type":"array","title":"Taxonomies"},"statuses":{"items":{"$ref":"#/components/schemas/GenomeStatusPublic"},"type":"array","title":"Statuses"}},"type":"object","required":["name","id","genome_source","taxonomies"],"title":"GenomePublic","description":"Public genome model with taxonomies and statuses."},"GenomeSourcePublic":{"properties":{"name":{"type":"string","title":"Name"},"version":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Version"},"description":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Description"},"source":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Source"},"url":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Url"},"id":{"type":"integer","title":"Id"}},"type":"object","required":["name","id"],"title":"GenomeSourcePublic"},"GenomeStatusPublic":{"properties":{"status_type":{"type":"string","title":"Status Type"},"origin":{"type":"string","title":"Origin"},"collection_release_id":{"type":"integer","title":"Collection Release Id"},"id":{"type":"integer","title":"Id"}},"type":"object","required":["status_type","origin","collection_release_id","id"],"title":"GenomeStatusPublic"},"HTTPValidationError":{"properties":{"detail":{"items":{"$ref":"#/components/schemas/ValidationError"},"type":"array","title":"Detail"}},"type":"object","title":"HTTPValidationError"},"PangenomePublic":{"properties":{"gene_count":{"type":"integer","title":"Gene Count"},"genome_count":{"type":"integer","title":"Genome Count"},"family_count":{"type":"integer","title":"Family Count"},"edge_count":{"type":"integer","title":"Edge Count"},"persistent_family_count":{"type":"integer","title":"Persistent Family Count"},"persistent_family_min_genome_frequency":{"type":"number","title":"Persistent Family Min Genome Frequency"},"persistent_family_max_genome_frequency":{"type":"number","title":"Persistent Family Max Genome Frequency"},"persistent_family_std_genome_frequency":{"type":"number","title":"Persistent Family Std Genome Frequency"},"persistent_family_mean_genome_frequency":{"type":"number","title":"Persistent Family Mean Genome Frequency"},"shell_family_count":{"type":"integer","title":"Shell Family Count"},"shell_family_min_genome_frequency":{"type":"number","title":"Shell Family Min Genome Frequency"},"shell_family_max_genome_frequency":{"type":"number","title":"Shell Family Max Genome Frequency"},"shell_family_std_genome_frequency":{"type":"number","title":"Shell Family Std Genome Frequency"},"shell_family_mean_genome_frequency":{"type":"number","title":"Shell Family Mean Genome Frequency"},"cloud_family_count":{"type":"integer","title":"Cloud Family Count"},"cloud_family_min_genome_frequency":{"type":"number","title":"Cloud Family Min Genome Frequency"},"cloud_family_max_genome_frequency":{"type":"number","title":"Cloud Family Max Genome Frequency"},"cloud_family_std_genome_frequency":{"type":"number","title":"Cloud Family Std Genome Frequency"},"cloud_family_mean_genome_frequency":{"type":"number","title":"Cloud Family Mean Genome Frequency"},"partition_count":{"type":"integer","title":"Partition Count"},"rgp_count":{"type":"integer","title":"Rgp Count"},"spot_count":{"type":"integer","title":"Spot Count"},"all_genome_fluidity":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"All Genome Fluidity"},"shell_genome_fluidity":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Shell Genome Fluidity"},"cloud_genome_fluidity":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Cloud Genome Fluidity"},"accessory_genome_fluidity":{"anyOf":[{"type":"number"},{"type":"null"}],"title":"Accessory Genome Fluidity"},"module_count":{"type":"integer","title":"Module Count"},"family_in_module_count":{"type":"integer","title":"Family In Module Count"},"mean_completeness":{"type":"number","title":"Mean Completeness"},"mean_contamination":{"type":"number","title":"Mean Contamination"},"mean_fragmentation":{"type":"number","title":"Mean Fragmentation"},"mean_exact_core_families_count_per_genome":{"type":"number","title":"Mean Exact Core Families Count Per Genome"},"mean_soft_core_families_count_per_genome":{"type":"number","title":"Mean Soft Core Families Count Per Genome"},"mean_persistent_families_count_per_genome":{"type":"number","title":"Mean Persistent Families Count Per Genome"},"mean_shell_families_count_per_genome":{"type":"number","title":"Mean Shell Families Count Per Genome"},"mean_cloud_families_count_per_genome":{"type":"number","title":"Mean Cloud Families Count Per Genome"},"annotation_source":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Annotation Source"},"has_multiple_species":{"type":"boolean","title":"Has Multiple Species","default":false},"name":{"type":"string","title":"Name"},"file_md5sum":{"type":"string","title":"File Md5Sum"},"id":{"type":"integer","title":"Id"},"collection_release":{"$ref":"#/components/schemas/CollectionReleasePublic"},"taxonomy":{"$ref":"#/components/schemas/TaxonomyPublic"},"collection_release_id":{"type":"integer","title":"Collection Release Id"},"persistent_fraction":{"type":"number","title":"Persistent Fraction"},"shell_fraction":{"type":"number","title":"Shell Fraction"},"cloud_fraction":{"type":"number","title":"Cloud Fraction"},"average_families_per_genome":{"type":"number","title":"Average Families Per Genome"},"genome_category_counts":{"additionalProperties":{"type":"integer"},"type":"object","title":"Genome Category Counts"}},"type":"object","required":["gene_count","genome_count","family_count","edge_count","persistent_family_count","persistent_family_min_genome_frequency","persistent_family_max_genome_frequency","persistent_family_std_genome_frequency","persistent_family_mean_genome_frequency","shell_family_count","shell_family_min_genome_frequency","shell_family_max_genome_frequency","shell_family_std_genome_frequency","shell_family_mean_genome_frequency","cloud_family_count","cloud_family_min_genome_frequency","cloud_family_max_genome_frequency","cloud_family_std_genome_frequency","cloud_family_mean_genome_frequency","partition_count","rgp_count","spot_count","module_count","family_in_module_count","mean_completeness","mean_contamination","mean_fragmentation","mean_exact_core_families_count_per_genome","mean_soft_core_families_count_per_genome","mean_persistent_families_count_per_genome","mean_shell_families_count_per_genome","mean_cloud_families_count_per_genome","name","file_md5sum","id","collection_release","taxonomy","collection_release_id","persistent_fraction","shell_fraction","cloud_fraction","average_families_per_genome"],"title":"PangenomePublic"},"TaxonPublic":{"properties":{"name":{"type":"string","title":"Name"},"rank":{"type":"string","title":"Rank"},"depth":{"type":"integer","title":"Depth"},"taxid":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Taxid"},"taxonomy_source_id":{"anyOf":[{"type":"integer"},{"type":"null"}],"title":"Taxonomy Source Id"},"id":{"type":"integer","title":"Id"}},"type":"object","required":["name","rank","depth","id"],"title":"TaxonPublic"},"TaxonomyPublic":{"properties":{"taxonomy_source":{"$ref":"#/components/schemas/TaxonomySourcePublic"},"taxa":{"items":{"$ref":"#/components/schemas/TaxonPublic"},"type":"array","title":"Taxa"}},"type":"object","required":["taxonomy_source","taxa"],"title":"TaxonomyPublic"},"TaxonomySourcePublic":{"properties":{"name":{"type":"string","title":"Name"},"ranks":{"type":"string","title":"Ranks"},"version":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Version"},"description":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Description"},"source":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Source"},"url":{"anyOf":[{"type":"string"},{"type":"null"}],"title":"Url"},"id":{"type":"integer","title":"Id"}},"type":"object","required":["name","ranks","id"],"title":"TaxonomySourcePublic"},"ValidationError":{"properties":{"loc":{"items":{"anyOf":[{"type":"string"},{"type":"integer"}]},"type":"array","title":"Location"},"msg":{"type":"string","title":"Message"},"type":{"type":"string","title":"Error Type"},"input":{"title":"Input"},"ctx":{"type":"object","title":"Context"}},"type":"object","required":["loc","msg","type"],"title":"ValidationError"}}}}